Influences on the composition and ecology of biofouling communities associated with salmon aquaculture (PhD project)

Biofouling (the undesirable growth and accumulation of organisms on submerged surfaces) presents a set of challenges to the salmon aquaculture industry, with excessive fouling of nets posing risks to fish health, farm infrastructure and the broader environment. To manage this, industry currently undertakes visual estimations of biofouling to decide when net cleaning is required. Currently, these visual surveys are manual and time-consuming, and nets are generally still cleaned on a set schedule, regardless of the biofouling status of individual pens.

This project seeks to monitor and understand biofouling in a consistent, reproducible, time-efficient manner based on in situ sampling. Specifically, the use of machine learning and eDNA methods for rapid analyses of macro- and microbiological biofouling communities will be investigated, and how these might be applied as diagnostic and monitoring tools for industry. The four aims of this project are to:

  • Understand what grows when and where
  • Develop a software tool to automatically quantify net occlusion caused by biofouling
  • Automatically quantify multiple biofouling taxa in situ
  • Understand cnidarian and bacterial communities in relation to net cleaning, seasonality and lease location

It is hoped that introducing robust biofouling monitoring systems can contribute to reduced operational costs of net cleaning and increase farm efficiencies, as well as improving animal health outcomes.

Project Status
Current
Commenced May 2022
Robin Cappaert

Institute for Marine and Antarctic Studies
15-21 Nubeena Crescent
Taroona, Tasmania 7053 Australia
+61 6226 8277 
Acknowledgment of Country
We acknowledge the palawa/pakana and Gadigal/Wangal people, the traditional custodians of the land and sea upon which we live and work, and their enduring cultures and knowledge of our oceans and coasts.

We recognise that decisions and practices affecting the future of Indigenous education and research are vital to the self-determination, wellbeing and livelihood of Aboriginal and Torres Strait Islander people, and to shaping the Australian society in which we live.
Copyright 2025 Institute for Marine and Antarctic Studies.
Top menu-circle linkedin facebook pinterest youtube rss twitter instagram facebook-blank rss-blank linkedin-blank pinterest youtube twitter instagram